Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs2600867 chr15:48031230 A/C 9.67E-6 134 45.47 40.57 16.53 KM Plot
TGCT rs261375 chr13:21871882 A/G 5.5E-7 134 23.43 36.7 43.68 KM Plot
TGCT rs261423 chr13:21852331 A/C 6.44E-7 132 46.3 35.73 14.42 KM Plot
TGCT rs261426 chr13:21852789 T/C 6.44E-7 132 46.3 35.73 14.42 KM Plot
TGCT rs2644706 chr17:673895 C/G 7.43E-5 130 20.6 22.83 46.07 KM Plot
TGCT rs2740343 chr17:669546 A/T 7.43E-5 130 20.6 22.83 46.07 KM Plot
TGCT rs2741502 chr20:43936265 C/T 0.000121 134 42.12 42.1 38.2 KM Plot
TGCT rs2750009 chr17:678380 A/G 7.43E-5 130 20.6 22.83 46.07 KM Plot
TGCT rs2750012 chr17:684261 G/A 7.43E-5 130 20.6 22.83 46.07 KM Plot
TGCT rs2750013 chr17:686133 A/G 6.73E-5 131 20.6 22.83 46.3 KM Plot
TGCT rs2783107 chr13:21837532 C/A 5.93E-7 132 46.3 36.7 14.42 KM Plot
TGCT rs2798601 chr1:154779685 A/G 7.42E-6 134 46.3 36.63 46.3 KM Plot
TGCT rs2830109 chr21:27569389 A/T 2.69E-5 129 42.1 52.43 17.1 KM Plot
TGCT rs28495349 chr8:103086081 T/C 0.00011 134 42.27 28.27 48.45 KM Plot
TGCT rs28538699 chr19:37967689 G/T 1.76E-13 133 45.47 36.12 17.1 KM Plot